[MARMAM] New publication: Deciphering Eurasian otter, harbour seal and grey seal diet using metabarcoding. (Eileen Heße & Joy O. Boyi)

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Mon Aug 1 03:10:41 PDT 2022

Topic: New publication: Deciphering Eurasian otter, harbour seal and grey seal diet using metabarcoding. (Eileen Heße & Joy O. Boyi)


Dear MARMAMers,

Our co-authors and ourselves are very pleased to announce our recent publication in Molecular Ecology which has evaluated the diet of Eurasian otters, harbour seals and grey seals using metabarcoding.

Boyi, J. O., Heße, E., Rohner, S., Siebert, U., Gilles, A., & Lehnert, K. (2022). Deciphering Eurasian otter (Lutra lutra L.) and seal (Phoca vitulina L.; Halichoerus grypus F.) diet: metabarcoding tailored for fresh and saltwater fish species. Molecular Ecology, doi: https://doi.org/10.1111/mec.16635 <https://doi.org/10.1111/mec.16635>


Long-lived top predators shape biodiversity structure in their ecosystems and predator-prey interactions are critical in decoding how communities function. Studies on the foraging ecology of seals and Eurasian otters in Western Europe are outdated and most studies solely performed traditional hard part analysis. Molecular metabarcoding can be used as an innovative non-invasive diet analysis tool, which has proven efficient and complementary to hard part analysis, however lacking application in the wider North Sea area. In this study, DNA from digesta, collected between 2014-2020, were used to identify fish species in the diet of 47 Eurasian otters, 54 harbour seals and 21 grey seals by applying a next-generation metabarcoding approach. A newly designed 16S rRNA primer, providing the best coverage of >130 local marine and freshwater fish species, was used to amplify prey DNA from seal scats and otter gut content sampled from the North Sea and regional freshwater bodies. Frequent fish species included tench, ninespine stickleback and white bream in otters; hooknose and common roach in grey seals and Pleuronectidae and sand gobies in harbour seals. Bipartite network analysis showed a strong overlap of harbour and grey seal diets. Otter diet intersected with both seal species in terms of freshwater species. This study provides new knowledge about dietary composition and community assemblage of fish prey in otters and seals in the North Sea and regional freshwaters, and a new molecular tool to elucidate predator-prey interactions and interspecies competition in complex and changing ecosystems under pressure from anthropogenic activities.

The publication is freely available open access here: https://doi.org/10.1111/mec.16635 <https://doi.org/10.1111/mec.16635>

Please do contact us if you have any questions (eileen.hesse at tiho-hannover.de <mailto:eileen.hesse at tiho-hannover.de> or joy.ometere.boyi at tiho-hannover.de <mailto:joy.ometere.boyi at tiho-hannover.de>).

Thank you very much,

Eileen & Joy

On behalf of all the co-authors


Eileen Heße

Research associate & PhD candidate

ITAW | Institute for Terrestrial and Aquatic Wildlife Research

University for Veterinary Medicine Hannover, Foundation

eileen.hesse at tiho-hannover.de <mailto:eileen.hesse at tiho-hannover.de>
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